rs52579237 SNP Detail

Summary

• ID
  rs52579237
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:191572784 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTGTGTG TGTGTGCACA
  CGTTTGTGTA TGTGTGTGTG CAAGAGTGTG CGTGTGTCTG CTCGTGTGCG TGTGTCTTTG
  TGTGTGCATG AGTGTGTGTG TCTGTGTGTG TGCATATGTC TGTGTGCATG CACATATGTG
  TTTGTGCGTG TGTGTATGTG TGTGTGTTTA TGTGTGTCTG TGTATTTAGG GCAGAAAAGT
  R
  CCATTCAGCA GTAGAGTGCT CTCCTAGCAC ACATACAGAC TTGGGCTCCA TCTCCCAAGC
  CTGTGCAGCA TGGCTTACAA CTGGTGGCTG CTTGGAGCAG GCCCCTTTTC AGGCTCTGCC
  TGGGGCTAAT CTGGAGACAG GTGGGGATGG CTTGCTGCAA ACCAGCTAAA GTGACAGTGT
  TACCATTCCA GGGCTCGAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60360484	NES15857350	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52579237					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60360484	NES15857350	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191572784 () rs orientation: forward

Symbol	Name	Function Class
Rr426235	regulatory region 426235	535 bp distal
Rr426236	regulatory region 426236	628 bp distal
Rr426237	regulatory region 426237	within coordinates