rs52579314 SNP Detail

Summary

• ID
  rs52579314
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:44023288 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T GGCAGCTTAG AACAGCCTGT AACAGCAGTT CCAAAGGACC
  TGATGTCCTA GGGTGTCTGT GCAATGCGCA CGTGCACACA CACACACACA CACACAGACA
  S
  ACACACACAC ACACCATTAA AAGTAAATAC TAAATTTAAA AATAGAGAGA AAATACTAGT
  GAAAAATACT GTATCTGTAT TGTCTATACA ACTATTTTTC C                    
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147091217	ENSMUSSNP3403523	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52579314					SNP	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:44023288 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1509	CpG island 1509	1165 bp proximal
Crybg1	crystallin beta-gamma domain containing 1	within coordinates
D10Mit38	DNA segment, Chr 10, Massachusetts Institute of Technology 38	1207 bp distal
Gm67081	predicted gene, 67081	766 bp upstream
Rr430916	regulatory region 430916	1551 bp proximal
Rr430917	regulatory region 430917	1670 bp proximal
Rr430918	regulatory region 430918	1753 bp proximal
Tssr97502	transcription start site region 97502	1495 bp downstream
Tssr97503	transcription start site region 97503	1524 bp downstream
Tssr97504	transcription start site region 97504	1555 bp downstream
Tssr97505	transcription start site region 97505	1649 bp downstream
Tssr97506	transcription start site region 97506	1670 bp downstream