rs52579596 SNP Detail

Summary

• ID
  rs52579596
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:37136563 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTG TTTTCTTGGT TTTGGTTTTT
  Y
  GAGACAGGGT TTCTCTGTGT AGCCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147623224	ENSMUSSNP452148	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss324925287	CHEV_15_37066074	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52579596					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:37136563 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7042	CpG island 7042	246 bp distal
Gm34820	predicted gene, 34820	within coordinates
Gm41301	predicted gene, 41301	737 bp upstream
Gm41302	predicted gene, 41302	within coordinates
Gm63629	predicted gene, 63629	within coordinates
Rr714	regulatory region 714	within coordinates
Rr501169	regulatory region 501169	1609 bp distal
Rr501170	regulatory region 501170	663 bp distal
Rr501171	regulatory region 501171	444 bp distal
Rr501172	regulatory region 501172	within coordinates
Tssr131093	transcription start site region 131093	405 bp downstream
Tssr134082	transcription start site region 134082	550 bp upstream