rs52579712 SNP Detail

Summary

• ID
  rs52579712
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:35286622 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAATGCCTCC AGGATCAGAT ATCTCTGAGC ATGATGGGCT
  CTAGTTTTCT TACTCCTCTC CTTCTTTTCC TTCCTCCTTC CATTTCTTGT ATTCTTTTTT
  K
  GGGGGGGGTG GGTCAGAGTC TCCTGCTTTG AACTCCTGAT CCTCCTGCCT CTACCTTCTA
  ATGCTGGGAT TACACATGTG TATCACACCT AGGCTCTTT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145526322	ENSMUSSNP2215967	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52579712					SNP	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:35286622 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9078	CpG island 9078	1470 bp distal
Ly6g6c	lymphocyte antigen 6 family member G6C	within coordinates
Mpig6b	megakaryocyte and platelet inhibitory receptor G6b	1462 bp upstream
Tssr5100	transcription start site region 5100	527 bp downstream
Tssr144200	transcription start site region 144200	759 bp downstream
Tssr144201	transcription start site region 144201	736 bp downstream
Tssr144202	transcription start site region 144202	510 bp downstream
Tssr144203	transcription start site region 144203	314 bp downstream
Tssr144204	transcription start site region 144204	1048 bp upstream
Tssr144205	transcription start site region 144205	1075 bp upstream
Tssr144206	transcription start site region 144206	1176 bp upstream
Tssr144207	transcription start site region 144207	1213 bp upstream
Tssr144208	transcription start site region 144208	1258 bp upstream
Tssr144209	transcription start site region 144209	1679 bp upstream
Tssr144210	transcription start site region 144210	1726 bp upstream
Tssr144211	transcription start site region 144211	1756 bp upstream
Tssr144212	transcription start site region 144212	1791 bp upstream
Tssr144213	transcription start site region 144213	1804 bp upstream
Tssr144214	transcription start site region 144214	1831 bp upstream
Tssr144215	transcription start site region 144215	1897 bp upstream
Tssr144216	transcription start site region 144216	1935 bp upstream
Tssr144217	transcription start site region 144217	1970 bp upstream
Tssr147740	transcription start site region 147740	1457 bp upstream
Tssr147741	transcription start site region 147741	1441 bp upstream