rs52581364 SNP Detail

Summary

• ID
  rs52581364
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:176541518 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATTGTCCC CATTTCTTCC
  CCAGAGGGAG TTTCCGGGTT TGGCCTAGAG AGAAGGCTTC CTTTAAGGCC TAGCAAGATC
  AGAACTTGGT ATCCAGGCAG CTAATGTTTA CAAAGTATAC AGGGAAGAGA GAACTTAACA
  GAGACGGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTAAAGATGC
  Y
  TGGAGAGCCT TCTTCTGAAT CCTGAGAATA CATTTCTAAG GAAAGGATCC TAGGGTCATT
  GTCTAGGAAT ACTTTGGGTT TTTGCTCCCC CTGGTGTTAA TCAGTTTTCT GTTTCTATGA
  CAAAATGCCT GATATAATCT ATTCAAGATA AATAATTTTT TGTCTCTCAG TTTCCAGGGT
  TTAAACAAAT GGTTGGTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146339994	ENSMUSSNP129655	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320157475	CHEV_1_178644083	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52581364					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:176541518 () rs orientation: forward

Symbol	Name	Function Class
Rr396622	regulatory region 396622	1086 bp downstream
Rr423899	regulatory region 423899	1069 bp distal
Rr423900	regulatory region 423900	1355 bp distal