rs52581416 SNP Detail

Summary

• ID
  rs52581416
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:149760538 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGTG GCGGTGCGCG AGCGAGCATC
  S
  GCGGAGGGGC GCGGCTCGGG GCGGG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss148037747	ENSMUSSNP4939742	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs52581416					SNP	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149760538 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15330	CpG island 15330	within coordinates
Pik3cd	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	within coordinates
Rr605004	regulatory region 605004	48 bp distal
Rr605005	regulatory region 605005	within coordinates
Tssr44666	transcription start site region 44666	16 bp upstream
Tssr44667	transcription start site region 44667	within coordinates