rs52581813 SNP Detail

Summary

• ID
  rs52581813
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:86351146 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTTT CCTCGAGACA GGGCTTCTCT
  R
  TATAGCTCTG GCTGTCCTGG AACTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss136756129	ENSMUSSNP5788585	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss323056357	CHEV_9_86362700	CHEVERUD	SCREENING_POP	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs52581813					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:86351146 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi22102	CpG island 22102			1238 bp distal
Dop1a	DOP1 leucine zipper like protein A			Intron
				Noncoding-Transcript-Variant
Rr684098	regulatory region 684098			1929 bp distal
Rr684099	regulatory region 684099			1991 bp distal
Rr684100	regulatory region 684100			1182 bp distal
Tssr2956	transcription start site region 2956			1129 bp downstream
Tssr86391	transcription start site region 86391			1923 bp downstream
Tssr86392	transcription start site region 86392			1874 bp downstream
Tssr86393	transcription start site region 86393			1832 bp downstream