rs52582956 SNP Detail

Summary

• ID
  rs52582956
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:85386517 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGGGCCCG CTTCAATCCC
  CTGGCCGCGA TTCCGCCCGC GGGTGCGGGC CGCTGTAACC ACTGGTCCCT GGGAGGGGGA
  CACCCAAGGG AGACGCCGAG GGGCTCCTGC TGAGGACTAG AGAGGCTTCC CTCTTTCCAA
  TGCCACGAAA TTTGCAACTT GTCTATCCTC TGAAGTTCGA GCAGGTGGAA GGCCAACTCC
  Y
  AGGGTAAAAA ACGGGGTTGA TTCAATTACC AACATAGGGG AATGGGAGGG ACACCGGGAG
  TGGGGAAAGG AAGGCGGGGA GGAAGATGAG GGAAGGAGAT TGGCACTGCT GCAAGACATG
  GTGGCACATG TTTGCAATTC AGCAGTGGGG AGATGAAGGC TGAAGGCTCA GAGTCAAGTT
  CAACTTACAT CAGACAATTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60906787	NES15956993	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52582956					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60906787	NES15956993	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:85386517 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17643	CpG island 17643	93 bp distal
Rr633210	regulatory region 633210	within coordinates
Rr633211	regulatory region 633211	870 bp proximal
Rr633212	regulatory region 633212	1332 bp proximal
Rr633213	regulatory region 633213	1481 bp proximal
Rr633214	regulatory region 633214	1659 bp proximal