rs52583490 SNP Detail

Summary

• ID
  rs52583490
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:41582883 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATAGAGAG ACCCTGTCTC
  AAAACAAAGA CAAAACCCAA CAACAATCAA CAACAACCAT CAACAATCAT CATCATCAAC
  AACAACAACA ACAACAACAA CAACAACAAC AACAACAACA ACTTGCTACT AAATGGCACC
  GTCTATGTCA TCAGTGGCTA AGAACAATGC CCTCAGATGG TAACAGTACA CTTATATCCA
  R
  TGTTAATTAA CAGCAGTTTT GACTTAATTT GCTTTGTTGT CATCATTCCT TCCATCTACT
  CATTCAATTA TCCATCCATT TATCCATCCA TCCATCCATC CATCCATCCA TCCATCCATC
  CATCCATCCA TCCATTTATC CATCCATTTA TCCATCCATC CATCCATCCA TCCATTTATC
  CATCCATCCA TCCATCCATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60397250	NES15898095	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52583490					SNP	G	G	G	A	G	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60397250	NES15898095	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41582883 () rs orientation: forward

Symbol	Name	Function Class
Gm66500	predicted gene, 66500	within coordinates
Sclt1	sodium channel and clathrin linker 1	within coordinates