rs52584287 SNP Detail

Summary

• ID
  rs52584287
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121617329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATCACTGG GTCTTGCTGG
  GTCCCAGCTT GGCTGAGACA TAAACCCTGG GCTCAGGGAG GACCCAGGCT CAAATAAGCA
  GGTGGGAGGT GACAGCAGAG GACACTAGAC ACACTCAGGT GTCATCTGCA TATGTACAAG
  TGCACATTCA CACATGTACA TACAGGAACA GATACACAGA CACACATGTA CATACAGACA
  C
  ACAGACACAC ATGTACATAC AGACACACAT ATACATACAG ACAGACAGAC ATAAAAAACT
  TAAAAGAAGT TGAAAAGGCT GGGCAGGCTG GGCATAGTGG TACATGCCCT TTCATCTCAG
  AGATGTGGAT CTCTGTAGTC TAGCCTAGTC TACAAAACCG GTTCCAAGCC AGCCAGGAAC
  AACATAATGA GATCCTTTTT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	LG/J	MOLF/EiJ	PWK/PhJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
ss355473721	MGP_WTSI_2_121612584	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	LG/J	MOLF/EiJ	PWK/PhJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
rs52584287					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355473721	MGP_WTSI_2_121612584	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121617329 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Frmd5	FERM domain containing 5			Intron
				Noncoding-Transcript-Variant
Rr563873	regulatory region 563873			486 bp proximal
Rr563874	regulatory region 563874			978 bp proximal