rs52585229 SNP Detail

Summary

• ID
  rs52585229
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:3398586 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACACA CATACACACA CACATACACA
  Y
  ACACATACAC ATACACACAC ACACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CZECHII/EiJ	SPRET/EiJ
ss640970823	FVB_NJ_6_3348586	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CZECHII/EiJ	SPRET/EiJ
rs52585229					SNP	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss640970823	FVB_NJ_6_3348586	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:3398586 () rs orientation: forward

Symbol	Name	Function Class
Rr134883	regulatory region 134883	1015 bp proximal
Rr146113	regulatory region 146113	within coordinates
Rr146114	regulatory region 146114	1214 bp proximal
Rr378834	regulatory region 378834	1027 bp downstream
Rr399551	regulatory region 399551	807 bp upstream
Samd9l	sterile alpha motif domain containing 9-like	within coordinates
Tssr59689	transcription start site region 59689	715 bp downstream
Tssr59690	transcription start site region 59690	865 bp downstream
Tssr59691	transcription start site region 59691	959 bp downstream