rs52585372 SNP Detail

Summary

• ID
  rs52585372
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70415120 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTATTTATT TCAATTACAT TTCCAGTGCT ATCCCAAAAG
  TCCCACACAC GCTCCCCCAC CCACTCCCCT ACCCACCCAC TCCCACTTCT TGGCCCTGGC
  R
  TTCCCCTGTA CTGAGGCATA TAAAGTTTGC ACGACCAATG GGCCTCTCTT TCCACTGATG
  GCCGACTAGG CTATCTTCTG ATTCATATGC AGCTAGAGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss132372264	ENSMUSSNP2546297	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52585372					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70415120 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3188	CpG island 3188	959 bp proximal
Psmb6	proteasome (prosome, macropain) subunit, beta type 6	1073 bp upstream
Rr369269	regulatory region 369269	770 bp upstream
Rr450320	regulatory region 450320	743 bp distal
Rr450321	regulatory region 450321	704 bp distal
Rr450322	regulatory region 450322	602 bp proximal
Tssr102728	transcription start site region 102728	1067 bp upstream
Tssr102729	transcription start site region 102729	1615 bp upstream
Tssr102730	transcription start site region 102730	1660 bp upstream
Tssr102731	transcription start site region 102731	1687 bp upstream