rs52586374 SNP Detail

Summary

• ID
  rs52586374
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:81008517 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTATCCCAA AGTGGAAATT
  CTCCAATCTC ACCCTCCAGG GTGCTGGGAT TAAGTCATGT ATGAGCCCCA TATTTGGTTA
  TACCATATCA TTTACATAGA AGTTACTGGA GGTCAAAAAA GCAATTTAGA AAAACTTTTT
  GAGCAAAACC AAACAAACTT ACAAAGAATT TCTGCAATGT AATTTTTCTT AGGACCCTCA
  A
  TATATATAAT TACGCTGCAT CAAAGTAACT TTTATTATGT TTACTAAATG CTGGTTAAAG
  CTGTGAGGTC CTGGACTGTC TTATTGTATT TTCATACCCA GAAAATGGAG TCATGCTTAC
  AGAAAGTATA TGTTCAATTC ATTGAACTTA TGTTTAATTT TTAAAATATT TACTTATGTA
  TAGCATATAC ATAAGTAAAT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss146075187	ENSMUSSNP6324168	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs52586374					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:81008517 () rs orientation: forward

Symbol	Name	Function Class
Gm66613	predicted gene, 66613	within coordinates
Map4k3	mitogen-activated protein kinase kinase kinase kinase 3	within coordinates
Rr343206	regulatory region 343206	684 bp proximal
Tssr149503	transcription start site region 149503	309 bp upstream
Tssr149504	transcription start site region 149504	919 bp downstream