rs52586691 SNP Detail

Summary

• ID
  rs52586691
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:12730912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGCATGCCT TTAATCCCAG
  CACTCGGGAG GCAGAGGCAG GTGGATTTCT GAGTTCGAGG CCAGCCTGGT CTACAAAGTG
  AGTTCCAGGA CAGCCAGGGC TACAGAGAAA CCCTGTCTTG AAAAACCAAA AAAAAAAAAA
  AAAAAAAAAA AAGATTGAGC CTTGATCAGA AAAAAGAAAT AGATAAAATA AAATTAAAAG
  R
  AACCTTATAA TTGGTAAAAA AAAAAAATTA TTCAAATAAA GCTGAACATA GTGGCCCACA
  CCTTTATTCC CAGCAATAGG GAGACAGTGG CAGCTCATTC TCTGTAGGTT CAAGGTCATC
  CTGATCTACA TACCGAGTTC CAGGATAGCC AGGGCTACAC AGAGAAACCT TGTCTCGAAA
  AAAAAAAAAT TAATTGTTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322107106	CHEV_7_13582334	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs52586691					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:12730912 () rs orientation: forward

Symbol	Name	Function Class
Rr642427	regulatory region 642427	1155 bp proximal
Slc27a5	solute carrier family 27 (fatty acid transporter), member 5	within coordinates
Tssr70630	transcription start site region 70630	431 bp downstream
Tssr70631	transcription start site region 70631	682 bp downstream
Tssr70632	transcription start site region 70632	1125 bp downstream
Tssr70633	transcription start site region 70633	1155 bp downstream
Tssr70634	transcription start site region 70634	1187 bp downstream