rs52586856 SNP Detail

Summary

• ID
  rs52586856
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:25595843 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTCATGGC TACATAAATA
  CAAAGATAAT TTGCATATTC AAACATGTCT GCGAATATTC ACAGAAGCAT TCTCCCATGG
  GAGAAATGGG ATCATTTCCG GGGTTAGACA GGTCAACACT GGCACATGCA TATGTCCTTA
  CTCTATGCCC CCACCAAGGA AGAATATAGC TGGCTCAGGA GAATTCTTTC AAAGGCCCAG
  M
  ACATGCAAAC AAAACACCAG GAATGCCCAG GGTTCAGAGA AATAAAGGAA GAGAGGGAGG
  AAGAAAGGGA GGGAAGAAGG AAGGAAAGAA GCAATCCTAC TAGAATAAAA ACCATTACAA
  AGCCATATAT ATAATATAAA AATAGAAATA TGGATGATTT CTTTCGAATT CTTAATCATG
  GTCCCTTTTG GGCAAGCAGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss148868726	ENSMUSSNP815291	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs52586856					SNP	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:25595843 () rs orientation: forward

Symbol	Name	Function Class
5830408C22Rik	RIKEN cDNA 5830408C22 gene	within coordinates
Gm45745	predicted gene 45745	1026 bp upstream
Gm63713	predicted gene, 63713	1026 bp upstream
Tssr80685	transcription start site region 80685	1138 bp upstream
Tssr80686	transcription start site region 80686	1118 bp upstream
Tssr80687	transcription start site region 80687	1021 bp upstream