rs52587255 SNP Detail

Summary

• ID
  rs52587255
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18910655 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGCCTGGGG GGGGGACCGG GCCCGAGCTG GGGCTGCGGG
  GGCCGGCGGT GGCTGTGGTG GGGCAATGGC GGAGCGCGGC CCGGCCTTCT GCGGCCTCTA
  Y
  GACACGTCCT CTCTGCTGCA ATACTGCAAC GGTGAGAGCC CCCTTCCTAG TTCAGACCCT
  GGCCCCGCCC AGGGTGGACC TACCTCCTCC TGCCCCAACC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60972641	NES16155327	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52587255					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60972641	NES16155327	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18910655 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18450	CpG island 18450	within coordinates
Cpgi18451	CpG island 18451	1395 bp proximal
Eml2	echinoderm microtubule associated protein like 2	within coordinates
Gm71808	predicted gene, 71808	119 bp upstream
Rr155272	regulatory region 155272	1546 bp proximal
Rr167138	regulatory region 167138	within coordinates
Tssr64790	transcription start site region 64790	290 bp downstream
Tssr64791	transcription start site region 64791	256 bp downstream
Tssr64792	transcription start site region 64792	218 bp downstream
Tssr64793	transcription start site region 64793	193 bp downstream
Tssr64794	transcription start site region 64794	37 bp downstream
Tssr64795	transcription start site region 64795	1473 bp upstream