rs52587399 SNP Detail

Summary

• ID
  rs52587399
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:90016539 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCCT GGCATTCCAC TGTACTGAGG
  Y
  ATATAAATTT GCAAGACCAA GGGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148526597	ENSMUSSNP4076564	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss325274608	CHEV_16_90219896	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52587399					SNP	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:90016539 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8420	CpG island 8420	649 bp proximal
Rr519070	regulatory region 519070	1955 bp distal
Rr519071	regulatory region 519071	1340 bp distal
Rr519072	regulatory region 519072	613 bp proximal
Rr519073	regulatory region 519073	1114 bp proximal
Rr519074	regulatory region 519074	1122 bp proximal
Sod1	superoxide dismutase 1, soluble	1111 bp upstream
Tssr139276	transcription start site region 139276	10 bp upstream
Tssr139277	transcription start site region 139277	883 bp upstream
Tssr139278	transcription start site region 139278	918 bp upstream
Tssr139279	transcription start site region 139279	943 bp upstream
Tssr139280	transcription start site region 139280	969 bp upstream
Tssr139281	transcription start site region 139281	985 bp upstream
Tssr139282	transcription start site region 139282	1057 bp upstream
Tssr139283	transcription start site region 139283	1096 bp upstream