rs52587666 SNP Detail

Summary

• ID
  rs52587666
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:158225129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCGTGGGACA ACCCAGTTGT TTCCCACTTC GGGATGTTCT
  GTGATGGTTC CTCAGGTACT TTGTAATCTC CTGTTAACCT GATAGGAGAG TCTTCTTTCT
  Y
  TCTTTCTTTC TTTCTTTCTT TCTTTCTTTC TTTCTTTCTT TCTTTCTTTC TTTCTTTCTT
  TCTTTCTTTC CTTCCTTCCT TCCTTCCTTC CTTCTTTCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320588880	CHEV_2_158208945	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs52587666					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:158225129 () rs orientation: forward

Symbol	Name	Function Class
Snhg11	small nucleolar RNA host gene 11	within coordinates
Tssr21317	transcription start site region 21317	1811 bp downstream
Tssr21318	transcription start site region 21318	1035 bp downstream
Tssr21319	transcription start site region 21319	621 bp downstream
Tssr21320	transcription start site region 21320	585 bp downstream
Tssr21321	transcription start site region 21321	475 bp downstream
Tssr21322	transcription start site region 21322	352 bp downstream
Tssr21323	transcription start site region 21323	308 bp downstream
Tssr21324	transcription start site region 21324	270 bp downstream
Tssr21325	transcription start site region 21325	234 bp downstream
Tssr21326	transcription start site region 21326	210 bp downstream
Tssr21327	transcription start site region 21327	173 bp downstream
Tssr21328	transcription start site region 21328	127 bp downstream
Tssr21329	transcription start site region 21329	114 bp downstream
Tssr21330	transcription start site region 21330	25 bp downstream
Tssr21331	transcription start site region 21331	472 bp upstream
Tssr21332	transcription start site region 21332	609 bp upstream
Tssr21333	transcription start site region 21333	641 bp upstream
Tssr21334	transcription start site region 21334	1408 bp upstream
Tssr21335	transcription start site region 21335	1764 bp upstream
Tssr21336	transcription start site region 21336	1818 bp upstream
Tssr21337	transcription start site region 21337	1922 bp upstream
Tssr27228	transcription start site region 27228	within coordinates