rs52588753 SNP Detail

Summary

• ID
  rs52588753
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45174067 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTTT GACTTCATAT TGACTAAGGG
  R
  TCCTTTGAGC TGTGTGTGTA TGTGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61388323	NES16765015	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A		A	G	G		G
ss322942710	CHEV_9_45070852	CHEVERUD	SCREENING_POP	f	SNP								G				A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs52588753					SNP	A	A	A	A	A	A	A	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61388323	NES16765015	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45174067 () rs orientation: forward

Symbol	Name	Function Class
Gm20612	predicted gene 20612	1479 bp downstream
Il10ra	interleukin 10 receptor, alpha	within coordinates
Rr677873	regulatory region 677873	970 bp distal
Tssr89253	transcription start site region 89253	120 bp downstream
Tssr89254	transcription start site region 89254	187 bp downstream
Tssr89255	transcription start site region 89255	277 bp downstream
Tssr89256	transcription start site region 89256	301 bp downstream
Tssr89257	transcription start site region 89257	1407 bp downstream
Tssr89258	transcription start site region 89258	1448 bp downstream
Tssr89259	transcription start site region 89259	1471 bp downstream