rs52589343 SNP Detail

Summary

• ID
  rs52589343
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:23891521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGACA GCCAAGGCCA CACAGAGAAA
  Y
  CCTGTCTCAA AATGTGTGTG TGTGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145330284	ENSMUSSNP3938018	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss325326749	CHEV_17_23809514	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52589343					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:23891521 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8682	CpG island 8682	834 bp proximal
Hcfc1r1	host cell factor C1 regulator 1 (XPO1-dependent)	1049 bp upstream
Rr329687	regulatory region 329687	1721 bp distal
Rr329688	regulatory region 329688	121 bp distal
Rr339270	regulatory region 339270	279 bp proximal
Rr405075	regulatory region 405075	897 bp upstream
Thoc6	THO complex 6	within coordinates
Tssr142940	transcription start site region 142940	1034 bp upstream
Tssr142941	transcription start site region 142941	1351 bp upstream
Tssr142942	transcription start site region 142942	1443 bp upstream
Tssr146630	transcription start site region 146630	1755 bp upstream
Tssr146631	transcription start site region 146631	1674 bp upstream
Tssr146632	transcription start site region 146632	1634 bp upstream
Tssr146633	transcription start site region 146633	1606 bp upstream
Tssr146634	transcription start site region 146634	1603 bp upstream
Tssr146635	transcription start site region 146635	1010 bp downstream
Tssr146636	transcription start site region 146636	1278 bp downstream