rs52591862 SNP Detail

Summary

• ID
  rs52591862
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19114886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGATCTAGG ACAGTGTCAG
  AACTAAGTAG AAAGACTCTC TCAAAAAGAA AAGGGACTGG AGCTCAGTGA TTAAGAGCAC
  TGACTGCTCT TCCAAAGGTC CTGAATTCAA ATCCCAGCAA CCACATGGTG GCTCACAACC
  ATCAGTAATG AGATTGGATA CCCCCTTCTG GTATATCTGA AAACAGCTAC AATGTACTTA
  T
  ATATAACAAA TAAATCTTAA AAAAAAAAAG AAAGAAAAGA AAGGATGAAA TGAAGGGAGG
  AAGGACTAAA AGGTGATATT TGAGCAAGAA TCCAGAGATA TGAAATAACT GACAGCATTG
  TCCAGCCCTC AGGTGGGTTA GCCACAAGCT GGGGCCAGCC ACCCAGGCTA TAGAGTGAGC
  TCCGGACCAG CTTGGGTTAC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148474223	ENSMUSSNP4527012	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52591862					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19114886 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18481	CpG island 18481	591 bp proximal
Ercc2	excision repair cross-complementing rodent repair deficiency, complementation group 2	1056 bp upstream
Gm26852	predicted gene, 26852	1259 bp downstream
Rr400148	regulatory region 400148	827 bp upstream
Rr643124	regulatory region 643124	559 bp proximal
Rr643125	regulatory region 643125	1036 bp proximal
Tssr64844	transcription start site region 64844	1044 bp upstream