rs52594445 SNP Detail

Summary

• ID
  rs52594445
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:170671194 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T AACATCGGCC CTAGCAGAAA ACTTCCCAGG CTCTTCAAAG
  CCTGCAGAGC GCCTGCTGAG CGCCTGCTGA GCGCCTGCTG AGCGCCTGCT GAGCGCCTGC
  A
  GAGCGCCTGC TGAGCGCCTG CTGAGCGCCT GCTGAGCGCC TGCTGAGCGC CTGCAGAGCG
  CCTGCTGAGC GCCTGCTGAG CGCCTGCTGA GCGCCTGCTG A                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss146145927	ENSMUSSNP104074	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J
rs52594445					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170671194 () rs orientation: forward

Symbol	Name	Function Class
Atf6	activating transcription factor 6	Intron
Rr423131	regulatory region 423131	826 bp proximal
Rr423132	regulatory region 423132	936 bp proximal
Rr423133	regulatory region 423133	1792 bp proximal
Tssr14927	transcription start site region 14927	1835 bp upstream