rs52594583 SNP Detail

Summary

• ID
  rs52594583
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:156739562 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACAAAGCGA CAGGTTAAGA TTCGGTCATT
  TGACCATTTC TAGTAACATA GTTGACAAAA TAATCTAAAA GCATGCTGTG CTTCATGAGA
  AACGTAGAAA GAGTCTGAAT TTTAATTCCC AGCTGAAGAG AAAAGACAAG ACCGCTAAAA
  W
  ATAAAAACAG AACCAAGGCC tcaccctcac cttctacacc ctcaccttct acaccctcac
  cttctacacc ctcaccctca ccttctacac cctcaccttc tacaccctca ccttctacac
  cctcaccttc tacaccctca ccttctacac                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss145809067	ENSMUSSNP6814577	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
ss320073037	CHEV_1_158842123	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs52594583					SNP	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156739562 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ralgps2	Ral GEF with PH domain and SH3 binding motif 2			Intron
				Noncoding-Transcript-Variant
Rr396428	regulatory region 396428			654 bp downstream
Rr421275	regulatory region 421275			1905 bp distal
Rr421276	regulatory region 421276			679 bp distal