rs52595142 SNP Detail

Summary

• ID
  rs52595142
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99510032 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCCTTTCC TCTCCAATTT
  GCTTTTGGAC ACAGTGTTTG AAGGAAATTA CAACAGAAAT TAGAAGGTAG AGAAGTTAAG
  TTATATACAA TGAAAAGTTT TGTTGTTGCT TTTTTTTGTT GTTGTTTTGT TTGTTTTGTT
  TGCTTTTGAT TTAAGTAAGT ATCTCTTGTT TTTATTCTTG TAAAGGCAGT TCCTTTGCAG
  Y
  TTAGTTTAAC AAAGGGGAGG CAAACACTGG CCTTTTGCTA AGCACCGAGC TACCTCTGTA
  CAGACAAAGC CGATAAATCA CAGTCTCTTC CACAGATGCA GAGAAATACG TAATCTTAGT
  ATAGGGCTTT ATCAGGCAGT GGGATAGCTC AGGATGCCAC CAGAGTACAC CAGGGCACAT
  GATATAGCCC GACTTCACGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss132712405	ENSMUSSNP365174	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52595142					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99510032 () rs orientation: forward

Symbol	Name	Function Class
Gm32730	predicted gene, 32730	within coordinates
Krtap2-20	keratin associated protein 2-20	392 bp downstream
Tssr104883	transcription start site region 104883	1766 bp upstream
Tssr110694	transcription start site region 110694	1226 bp downstream
Tssr110695	transcription start site region 110695	1711 bp downstream