rs52596492 SNP Detail

Summary

• ID
  rs52596492
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135778418 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGCTGCTAA AGCAATAGGG GAGGAACCCA GTTTTCTGCA
  GATCTGGCCC TACTCCCCAG GGTATTGGGA GGGTCAGGGG ACGGGGAGGA ACCATCTCTA
  R
  CCAAGTGTCC CTGCTCACCA TCCCCTTCAG ACAGAGCGGA AGAGTGGGAA GAGACAGACA
  GAGAGAGAGA AGAAGAAGAA GATCCTGGCA GAGAGGAGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145548383	ENSMUSSNP6497305	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52596492					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135778418 () rs orientation: forward

Symbol	Name	Function Class
Rr12645	regulatory region 12645	within coordinates
Tnnt2	troponin T2, cardiac	within coordinates
Tssr227	transcription start site region 227	1235 bp upstream
Tssr9020	transcription start site region 9020	1832 bp downstream
Tssr9021	transcription start site region 9021	1812 bp downstream
Tssr9022	transcription start site region 9022	1324 bp downstream
Tssr9023	transcription start site region 9023	1250 bp downstream
Tssr9024	transcription start site region 9024	1214 bp downstream
Tssr9025	transcription start site region 9025	924 bp downstream
Tssr9026	transcription start site region 9026	726 bp downstream
Tssr9027	transcription start site region 9027	608 bp downstream
Tssr9028	transcription start site region 9028	570 bp downstream
Tssr9029	transcription start site region 9029	within coordinates
Tssr9030	transcription start site region 9030	32 bp upstream
Tssr9031	transcription start site region 9031	91 bp upstream
Tssr9032	transcription start site region 9032	674 bp upstream
Tssr9033	transcription start site region 9033	1519 bp upstream
Tssr13894	transcription start site region 13894	1827 bp upstream
Tssr13895	transcription start site region 13895	1783 bp upstream
Tssr13896	transcription start site region 13896	1256 bp upstream
Tssr13897	transcription start site region 13897	1228 bp upstream
Tssr13898	transcription start site region 13898	57 bp downstream
Tssr13899	transcription start site region 13899	125 bp downstream
Tssr13900	transcription start site region 13900	135 bp downstream
Tssr13901	transcription start site region 13901	696 bp downstream
Tssr13902	transcription start site region 13902	1557 bp downstream