About   Help   FAQ
rs52598826 SNP Detail
Summary
  • ID
    rs52598826
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr11:9823665 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CCAAACCAGG ACTTGGTTCT
    TTTAGAAAAT CAACAAAATA GATAAACCCT TAGCCAGACT AACTACAGAG CACAGGGATA
    GTATCCTAAT TAACAAAATC AGAAATGAAA AGTGAGACAT AACAAGAGTA TCTGAGGAAT
    CAAAAAACAA AACAAAACAA AACAAAAACC ATCAGATCCT ACTACAAAAG TCTATACTCA
    M
    CAAAACTGGA TAACTTGGAT GAAATGGACA TTTTTCTAGA CAGATACCAG TACCAAGGTT
    CAATCAGGAT CAGATTAATG ACCTAAAGAG TCCCATATTC CCTAAAGAAA TAGAAACAGT
    CATTAGTAGT CTCAAAACCA AAACCAAAAC CAAAACCAAA ACCAAAACCA AAACCAAAAC
    CAAAACCAAA ACCAAAACCA                                            
    
    M = A/C
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
DBA/2J
LG/J
SM/J
ss131676075 ENSMUSSNP5229404 ENSEMBL ENSEMBL_Sanger f SNP A C A
ss323558260 CHEV_11_9773668 CHEVERUD SCREENING_POP f SNP C A
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
DBA/2J
LG/J
SM/J
rs52598826 SNP A C A C A
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:9823665 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Tssr106858 transcription start site region 106858 72 bp downstream
Tssr106859 transcription start site region 106859 143 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
12/17/2024
MGI 6.24
The Jackson Laboratory