rs52599130 SNP Detail

Summary

• ID
  rs52599130
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:136074162 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    attgttgta taagtgtgca tgagtatgca
  tgagtgtata tgagtgtttg tgagtgcatg tgtgtatata tatatatgtg tatatatata
  tatacataca tatatatata tatatacata tacacacata tacatgtata ttggatatac
  R
  tgagtatgtg tgGTTCTTGC TGTCTGTATA TCGTTGAGCT TGTCGCTGTT TTCTTCCCTT
  TGCCATTCTG TTGCCATGGA GAACTTCCAT GCTAGCAAGT CCAGGCCAAA GAGTGCACCA
  CAGGGGCTTA ACTGATGCAG TGTGTCTACA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145553488	ENSMUSSNP1656571	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss319994873	CHEV_1_138043001	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52599130					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136074162 () rs orientation: forward

Symbol	Name	Function Class
Kif21b	kinesin family member 21B	within coordinates
Rr19444	regulatory region 19444	1762 bp distal
Rr30732	regulatory region 30732	within coordinates
Tssr9046	transcription start site region 9046	1189 bp downstream
Tssr9047	transcription start site region 9047	125 bp upstream
Tssr9048	transcription start site region 9048	228 bp upstream