rs52599446 SNP Detail

Summary

• ID
  rs52599446
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:161320558 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A GTATAAGCTG AGGTTGGGGA CAAGGTACCG GAAATACCTT
  TTAAATGATA GGCCATTTAA AAGGGAAATA ACTTTTATTT TATTTTATCC TATTTTATTG
  T
  ATTAGATATT TTCTTTATTT ACATTTTGAA TGTTATCCCC TTTCCTGGTC TCCCTCCAAA
  AACCCCCTCT TCTTATCCCC TCCCCCTCTC CCTGCTCACC A                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145915160	ENSMUSSNP1599601	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52599446					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161320558 () rs orientation: forward

Symbol	Name	Function Class
Tnfsf18	tumor necrosis factor (ligand) superfamily, member 18	1666 bp upstream
Tssr9690	transcription start site region 9690	1660 bp upstream