rs52602870 SNP Detail

Summary

• ID
  rs52602870
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185415316 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A TAGTCGTGCA TACACACACA CACACACACA CACACACACA
  CGCACACGCA CACGCACATG CACACTCGCG CACACACACA CACACACACA CACACACGCA
  M
  GCACGCACAC ACGCTCTCAC ACACACAGAG CACACACAGA AAGGATGCTC TCTTGTAGAG
  TAACCAGAGT TCTGGCTGAA TCAGTGGAGG ATTTAGAACA A                    
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss146440016	ENSMUSSNP2257105	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52602870					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185415316 () rs orientation: forward

Symbol	Name	Function Class
Rr425420	regulatory region 425420	559 bp distal
Rr425421	regulatory region 425421	1011 bp distal
Rr425422	regulatory region 425422	1679 bp proximal
Rr425423	regulatory region 425423	1867 bp proximal