rs52603958 SNP Detail

Summary

• ID
  rs52603958
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:163187226 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATGAATGTT ACCTAGCATA TGTATAATCT ACAAAGTATT
  CACACACACA CACACACACA CACACACACA CACGCATACA CACGCATGCA CGGACACACA
  Y
  ACACTAAGAG AACAAGGGGA CTTGTGCCAG CAAAATGAAC TTCTTCAACA AGAAGATTGG
  GTATGACAAG TCTGTCTCTG TGGGTCTGCA GTTTATGAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145957046	ENSMUSSNP2553682	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52603958					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:163187226 () rs orientation: forward

Symbol	Name	Function Class
Rr696	regulatory region 696	1297 bp proximal
Rr846	regulatory region 846	within coordinates
Rr407134	regulatory region 407134	1782 bp proximal
Rr422080	regulatory region 422080	1128 bp distal
Rr422081	regulatory region 422081	1683 bp proximal
Tssr9725	transcription start site region 9725	1270 bp downstream