rs52604083 SNP Detail

Summary

• ID
  rs52604083
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:71962336 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTCTGCATA Ttctctctct ttctctctct
  ctctctctct ctccctctct ctctctctct ctctcctctt tccttctttc tcttcctctt
  cctctttttc ctctcacacc ctctctattt ccctccttct atctcttcac cccttccttc
  Y
  atcctctctc tgcctctact ctctctatcc ctcCTTTCTC TACAACAATA CCCTTCCCTA
  GCTATATAAA ACTGAATTAT TGTATATTCT TTAGTCTTTC CCTACAGGTT CCATATTAAT
  TCATTCAGAT GTATACATTT GCTGTGTCTT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss144647953	ENSMUSSNP573936	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
ss319787554	CHEV_1_71969751	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52604083					SNP	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:71962336 () rs orientation: forward

Symbol	Name	Function Class
Gm70455	predicted gene, 70455	1397 bp downstream