rs52604907 SNP Detail

Summary

• ID
  rs52604907
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:39404045 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTATCATG ATATGTTTCA
  TCTTACTCAT ATGCATGTCC AATCATGCCC AGGCATGGTT GGTAAATAGG AGATTCCCAC
  CCCCACCCCC CCCAAAAGTT CACTCAATGG ACACAGGCTG CCTTACTGCC CATATACTGA
  AGACCAGCCC AGGCTGAGTT GGGCTCACCT CCTGCAGTTC TTTTTTTTTT TTTTTCTTTC
  A
  AGACAGGGTT TCTCTGTGTA GCCCTGGCTG TCCTGGAACT CACTCTGTAG ACCAGGCTGG
  CCTTGAACTC AGAAATCCAC CTGCCTCTGC CTCCCAAGTG CTGGGACTAA AGGTGTGCAC
  CACCACTGCC CGGCCTGCAG TTCTAAGATA TGTTCCAGCA AGTTCAACCA CAAAAGGGGA
  GTCACCAGAG GTTGCTAGGG                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss148967750	ENSMUSSNP7175962	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J
rs52604907					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:39404045 () rs orientation: forward

Symbol	Name	Function Class
Gm53549	predicted gene, 53549	within coordinates
Npas2	neuronal PAS domain protein 2	1724 bp downstream
Rr29345	regulatory region 29345	1955 bp proximal
Tssr6374	transcription start site region 6374	1967 bp downstream