rs52605005 SNP Detail

Summary

• ID
  rs52605005
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:79165643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCGTG TGCGTGTGCG TGTGCGTGTG
  T
  GTGTGTGTGT GTGTGTGTGT GTGTG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss132448243	ENSMUSSNP5137616	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs52605005					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:79165643 () rs orientation: forward

Symbol	Name	Function Class
D11Mit94	DNA segment, Chr 11, Massachusetts Institute of Technology 94	within coordinates
Gm44787	predicted gene 44787	869 bp upstream
Rr241861	regulatory region 241861	within coordinates
Rr251784	regulatory region 251784	574 bp distal
Rr251785	regulatory region 251785	1159 bp proximal
Tssr3596	transcription start site region 3596	1963 bp upstream
Tssr103435	transcription start site region 103435	1763 bp upstream
Tssr109475	transcription start site region 109475	926 bp upstream