rs52605610 SNP Detail

Summary

• ID
  rs52605610
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156768692 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATGTGCCAA CAACAATACA TTCAAAGATA GATAGATACA
  TACATAGATA CATAGATACA TAGATAGAGA TACGTGTGTG TGTGTGTGTG TGTGTGTGTG
  T
  GTGTGTGTGT AATTGTCCCA AGTTATTAAC TGCTTTTAAA GTAGGAAAAA ATAAGGAGCC
  TCGGGGAATT TCATTTGGTA TAAATGTCTT GCAGCCACT                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145809614	ENSMUSSNP241242	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52605610					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156768692 () rs orientation: forward

Symbol	Name	Function Class
4930439D14Rik	RIKEN cDNA 4930439D14 gene	927 bp downstream
Cpgi904	CpG island 904	893 bp distal
Ralgps2	Ral GEF with PH domain and SH3 binding motif 2	1496 bp upstream
Tssr9581	transcription start site region 9581	1433 bp downstream
Tssr14477	transcription start site region 14477	1573 bp upstream
Tssr14478	transcription start site region 14478	1507 bp upstream
Tssr14479	transcription start site region 14479	1465 bp upstream
Tssr14480	transcription start site region 14480	1082 bp upstream