rs52606136 SNP Detail

Summary

• ID
  rs52606136
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:27481538 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCAG ATGGTGGAGG CCTAGCTTAC
  R
  AAATTCAGAG GGAAGATTAA AGATG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148807071	ENSMUSSNP5240717	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss319668049	CHEV_1_27499302	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52606136					SNP	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:27481538 () rs orientation: forward

Symbol	Name	Function Class
Gm70420	predicted gene, 70420	749 bp upstream
Rr371030	regulatory region 371030	221 bp upstream