rs52606271 SNP Detail

Summary

• ID
  rs52606271
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:21297161 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAGGATCT GAGTTAAATG
  GCATGGAACC TGTAAGCCTG GCTGTGTGCA GTCTGACTAA GTGAGCTCTC GTGGTACACA
  TCATTGAGGC TAGCTCAGGG AGAACACGAG ATAGCAGACA AGAGTGGCAC ACATTTTTTT
  TTACTTACCA GATGTAGCAC CACTTCTCCC CAACAGGTGG CGCTGGTTCT CTGTAACATT
  Y
  TGTTCTCGCC CCTCCTCTCT CTTCCCCTCC CCTTTCCTCC CCTGCCTCTC TTCTTGTGTC
  ATCTCTTCTC CCTTCCCTTT ACTCCCTCTC TTGCTTTCTT CCCCCACTCC ATGGGCAAGC
  ATTTTAAATA ACCAGATTGC GATTTGTTTT CCACTTTGAG TTTAACATCT CTCATGCTGG
  GCACTGGTTT TCATTTATTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52168162	NES15221845	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52606271					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52168162	NES15221845	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:21297161 () rs orientation: forward

Symbol	Name	Function Class
1700021A07Rik	RIKEN cDNA 1700021A07 gene	within coordinates
Cpgi1360	CpG island 1360	1720 bp distal
Rr214085	regulatory region 214085	within coordinates
Rr224569	regulatory region 224569	1760 bp distal
Rr368955	regulatory region 368955	1870 bp downstream
Tssr92636	transcription start site region 92636	1802 bp downstream
Tssr92637	transcription start site region 92637	1781 bp downstream