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rs52606481 SNP Detail
Summary
  • ID
    rs52606481
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr1:34793307 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                        C AGGTCTGTGT GTATGTGTCA AGTGAGGAGG AAAAATACAA
    TATCAGGATG GAGGAGACAG GCAAATCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT
    S
    TGTCTCTCTC TGTGTGTGTG TGTCTGTCTG TCTGTCTGTC TGTCTTTCAT TGGGATTGCT
    TACAGGATCA TGGGTACAGG GTTATAAGTA CCTTGCTAGT G                    
    
    S = C/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
A/J
DBA/2J
ss148896879 ENSMUSSNP1463820 ENSEMBL ENSEMBL_Sanger f SNP C G
SNP Consensus Information
SNP Consensus Type
A/J
DBA/2J
rs52606481 SNP C G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:34793307 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Arhgef4 Rho guanine nucleotide exchange factor 4 within coordinates
Gm32790 predicted gene, 32790 within coordinates
Gm37224 predicted gene, 37224 1304 bp downstream
Gm37845 predicted gene, 37845 749 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory