rs52606515 SNP Detail

Summary

• ID
  rs52606515
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:69664347 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAG AAGAAGAAGA AGAAGAAGAA
  R
  AAGAAGAAGA AGAAGAAGAA GAAGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CZECHII/EiJ	JF1/MsJ	MOLF/EiJ	NZW/LacJ	PWK/PhJ	SPRET/EiJ
ss643426977	FVB_NJ_13_69655106	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	G	A	A	G	G	G	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CZECHII/EiJ	JF1/MsJ	MOLF/EiJ	NZW/LacJ	PWK/PhJ	SPRET/EiJ
rs52606515					SNP	A	A	G	A	A	G	G	G	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss643426977	FVB_NJ_13_69655106	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:69664347 () rs orientation: forward

Symbol	Name	Function Class
Rr273498	regulatory region 273498	54 bp proximal
Rr277031	regulatory region 277031	1147 bp distal
Tent4a	terminal nucleotidyltransferase 4A	within coordinates