rs52607414 SNP Detail

Summary

• ID
  rs52607414
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:112423380 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCAT CTGTCAACAA TGTGTTGTAT
  K
  TCTCCTCTGT ATGCATGATG TGTGT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52696967	NES15533610	PERLEGEN	MM_PANEL2	f	SNP	T	T	G	G	T	G	T	T	G	T		T	G	T	T		T
ss324528912	CHEV_13_113077054	CHEVERUD	SCREENING_POP	f	SNP											G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs52607414					SNP	T	T	G	G	T	G	T	T	G	T	G	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52696967	NES15533610	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:112423380 () rs orientation: forward

Symbol	Name	Function Class
Ankrd55	ankyrin repeat domain 55	1605 bp upstream
Rr486330	regulatory region 486330	1115 bp proximal
Rr486331	regulatory region 486331	1985 bp proximal
Tssr121099	transcription start site region 121099	1650 bp upstream
Tssr121100	transcription start site region 121100	1670 bp upstream
Tssr121101	transcription start site region 121101	1734 bp upstream
Tssr121102	transcription start site region 121102	1944 bp upstream