rs52608590 SNP Detail

Summary

• ID
  rs52608590
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:67184191 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTTT TTCTCTTTTT ATGTCTCCCT
  C
  TTTTGTCTTT TTCACACTGA CATTC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss144537656	ENSMUSSNP6777057	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52608590					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:67184191 () rs orientation: forward

Symbol	Name	Function Class
Cps1	carbamoyl-phosphate synthetase 1	within coordinates
Rr17157	regulatory region 17157	591 bp distal
Rr34361	regulatory region 34361	192 bp distal
Tssr7193	transcription start site region 7193	224 bp downstream
Tssr7194	transcription start site region 7194	197 bp downstream
Tssr7195	transcription start site region 7195	144 bp downstream
Tssr7196	transcription start site region 7196	105 bp downstream
Tssr7197	transcription start site region 7197	34 bp downstream