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rs52609606 SNP Detail
Summary
  • ID
    rs52609606
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr10:76847248 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CCTAATATGA TTTTCTTCTT
    TGACAATAAA CTTTATCTCC CTAACAGCTT TAGATGTTGC AGGGAAATTA TGAAGCTGTC
    TCTGCGTTCC CCTAGTCCCA CACCAGTGTC ACCATAAGCA CCACCCACCA TAAGGCACCG
    CCCACCATAA GGCACCGCCC ACCATAAGGC ACCGCCTACC ATAAGGCACA CTTTATCCTC
    R
    TGGCCAACTA GGACCCGGGT ACTGCTTCCA AAGACTGTTC TTCCGGTTTC CTCAGTTTCC
    CTCTACTATC TTTTTCTGCT CCAAGGTCCC ACTCAGGGAA CACGTGGCAG GCAATCGACA
    CGTCCTCAGG CCCTCCCTGG AGGCGATGGC TTCTCATTGA TGACCTTGAC TGTACTGTTC
    CAGAATGTTC TGCACTGACA                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss52376417 NES15271961 PERLEGEN MM_PANEL2 f SNP A A A A A A A A A A A A G A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs52609606 SNP A A A A A A A A A A A A G A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss52376417 NES15271961 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr10:76847248 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm3137 predicted gene, 3137 87 bp downstream
Gm10787 predicted gene 10787 581 bp upstream
Rr434365 regulatory region 434365 885 bp proximal
Tssr94202 transcription start site region 94202 570 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory