rs52610759 SNP Detail

Summary

• ID
  rs52610759
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170978333 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTT TTGTTTTGGG TTCTTTTTGG
  K
  TTTTTTTGGT TTTAGTTTTT TGTTT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss119995563	PARCsnp_1.11859	PARC_SEQ	INBRED	f	SNP		T	G
ss119997109	PARCsnp_1.00823	PARC_SEQ	INBRED	f	SNP		T	G
ss146155004	ENSMUSSNP5760816	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs52610759					SNP	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170978333 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1011	CpG island 1011	4 bp distal
Mpz	myelin protein zero	within coordinates
Rr396555	regulatory region 396555	within coordinates
Rr423226	regulatory region 423226	184 bp distal
Rr423227	regulatory region 423227	41 bp distal
Rr423228	regulatory region 423228	within coordinates
Sdhc	succinate dehydrogenase complex, subunit C, integral membrane protein	124 bp upstream
Tssr14985	transcription start site region 14985	155 bp upstream