rs52611674 SNP Detail

Summary

• ID
  rs52611674
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:39534290 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gcacagcat ctcatgatga aaaatgcatt
  tgctccaact tcaactacaa aagtacttgt agcttattgt gattattatt taattttatt
  acttatgtgt atgactggtt tgtatatata tatatatata tatatatata tatatacata
  Y
  atatatatat atatatatat atatacacat atatatcatg tgtataatac ccatggaaac
  cagaagaagg tattagatcc cctggaaatg gagctacaga tggttgtaag ccaacatgtg
  ggtgttggaa attgaatctg ggtcctttgg                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148968951	ENSMUSSNP645250	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss319695760	CHEV_1_39552054	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52611674					SNP	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:39534290 () rs orientation: forward

Symbol	Name	Function Class
Rr409882	regulatory region 409882	1980 bp proximal
Tssr6382	transcription start site region 6382	1852 bp downstream