rs52612969 SNP Detail

Summary

• ID
  rs52612969
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60960010 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTCTCTGA AAATGTAAAG
  ATCAAGTTCA TGCAAACAAT CCCAGCACTT AAGAGTCCAG AACAGTACCA CAGTTCAGGG
  GCGAGCCTAG ACAACATAAT GAGACTTGGT CTCATTTAAA AAAAAAAAAT CATTCTTGGT
  TCACAGAGTC AGATTCAACT ATAAGGTTAC TATTGGCTAA TCCTGCTCTA AAAACTCACT
  Y
  ACCTACTGGG AGTCTGTCAT GGTATTTTAC TATTACTGTA TCCCACACAG TATCTGAGAT
  AAACAACAAC AACAACAACA ACAAAAATCT CATCTGTAAA CTTACCAGAA TCAGTCAAAA
  GCTCTCTGAG ATTGACCCTA GGACCTCCTT TATGAATGCC AGATCCAGGT AAATATTCTA
  CCACTGAGCT ATATCCCAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss52343483	NES15282573	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C		C	C	C		T
ss323327715	CHEV_10_60586979	CHEVERUD	SCREENING_POP	f	SNP											T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs52612969					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52343483	NES15282573	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60960010 () rs orientation: forward

Symbol	Name	Function Class
Gm55864	predicted gene, 55864	906 bp downstream
Rr228136	regulatory region 228136	1810 bp distal
Sgpl1	sphingosine phosphate lyase 1	within coordinates