rs52614819 SNP Detail

Summary

• ID
  rs52614819
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:27954092 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGAAACTC AGCTTTCTCA
  TCTATAAAAT GGGGATAATA ATACCTGTCC TGACCTTTCC ACATAGTTTT TATGAAGATC
  AAGTGAAGTC ATTTATGTGC ACTGTCAACT GTAGAGCATG GTGCAGCAAC CTGGGGTGTA
  ATCATCATAA ATTATGGTAG CCCAGTGCCA GAGTTTCAGC TTTTATGGCT TTTAAACTCT
  Y
  AGAACTCTCT TCTCAGCAAG TATAGGCTGT TCAGCAAGGA GTGTGTGTGT GTGTGTGTGT
  GTGTGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GTTCTTCCAC TAGTCATCCA
  TTTTCACCAC AATTGATTCT GACCATGAGT TTATGATAGA AATCATCTTT GATCAATTTT
  TAGCTTAGCT ATGCACATCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss52210465	NES15215937	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs52614819					SNP	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52210465	NES15215937	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:27954092 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1407	CpG island 1407	1557 bp distal
Ptprk	protein tyrosine phosphatase receptor type K	within coordinates