rs52617112 SNP Detail

Summary

• ID
  rs52617112
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:19488290 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C CTTTCCATGT TGAAGAATAG AAATCAGTAT CAGTGTCTCT
  CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTGT GTGTGTGTGT GTGTGTGTGT
  R
  TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TTCCATTCTC TTTAAGGCAG
  AGTCAAGGGC TTATAACAGG ACTCTCAAGG GCTTGTTTGC A                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss148742692	ENSMUSSNP1969404	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs52617112					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:19488290 () rs orientation: forward

Symbol	Name	Function Class
Tcrg	T cell receptor gamma chain	within coordinates
Trgc2	T cell receptor gamma, constant 2	940 bp downstream
Tssr118532	transcription start site region 118532	1003 bp upstream
Tssr121559	transcription start site region 121559	258 bp downstream
Tssr121560	transcription start site region 121560	317 bp downstream
Tssr121561	transcription start site region 121561	868 bp downstream