rs52619842 SNP Detail

Summary

• ID
  rs52619842
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:91365678 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCAGGACA GCCAGGGCTA
  TACAGAGAAA CCCTGTCTCG AAAAAAAAGA AAGAGAGAGA GAGAGAGAGA GAGAGAGAGA
  GAGAGAGAGA GAGAGAGAGA GAGAAAGAAA GGAAGGAAGG AAGGAAGGAA GGAAAAAAGA
  AAAAAAGAAA GAAAGAACAG AATGAAGACA CAAAAATGGG AATGTTGGGT ATGAATGAGT
  Y
  GACATTAGAA CCAATTACAC ATGTTTGTAT ACATGTATAG AGAGAACACT GTAAAAAAAA
  ATAACTTTAT GGCAATGGAG TCAGGAACAG ATAACAAATC CTTTATAACC TAGAAGCTAC
  CCAAGCTGCC TCAAAGAGAA TATTATCTTT AGAAGTTCAG TTTGTAGTGG AAAACTCAGT
  GCTCAAGTGT TTTTAATGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52458807	NES15442063	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52619842					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52458807	NES15442063	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:91365678 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4953	CpG island 4953	1479 bp proximal
Rr258556	regulatory region 258556	1123 bp proximal
Rr265753	regulatory region 265753	1322 bp proximal
Tssr114585	transcription start site region 114585	1534 bp upstream
Tssr114586	transcription start site region 114586	1562 bp upstream