rs52623058 SNP Detail

Summary

• ID
  rs52623058
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:48695799 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G GGAGGCAGAG GCAGGTGGAT TTCTGAGTTC GAGGCCAGCC
  TGGTCTACAG AGTGAGTTCC AGGACAGCCA GGGCTATAAA GAGAAACCCT GTCTTAAAAA
  A
  CCAAAAAAAA AAAAAAAAAA AGAGGTGTGC ATTACCAACT GAGCTGTTAG TAATTCCTAA
  CAAAATGAAT AGCAAAAATG TTGCTGTTTT GAACCCCTTT T                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss132111632	ENSMUSSNP2585634	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J
rs52623058					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:48695799 () rs orientation: forward

Symbol	Name	Function Class
Rack1	receptor for activated C kinase 1	within coordinates
Rr246622	regulatory region 246622	1798 bp distal
Snord95	small nucleolar RNA, C/D box 95	1766 bp downstream
Trim41	tripartite motif-containing 41	1432 bp downstream
Tssr101145	transcription start site region 101145	1523 bp downstream
Tssr107636	transcription start site region 107636	611 bp downstream