rs52623085 SNP Detail

Summary

• ID
  rs52623085
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:32985407 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGTTCCTC AGGTCTGAGT
  GACAGCTCAG TCTGTCAAGT GTTCAAACAC AAGGACCTCA GTTTGGGCCC CAAGCCAGGC
  AGTTTGCTCA CACATGTCTG TAACCTTGTT GGACATACAT CTATAATCTT AAGGCTAAGG
  CTTGGGGTAC ACAGGTCTGT CTAACAAAAA GGGTGAAAGA GAGGGAGAGG AGGAGGAGGG
  T
  AAATTGGGAA GAGGGAGAGG GGAAAGGAGC AAGAACATGT GTACATTTCT GCATGTGTGC
  TGGTGTGCAT GCGTACATGC ATACATGTGT CTGTGTGTGT GTGCATACCT CTCTCTGTCT
  CTCTCTCTCC CTCTCTGTCT GTCTCTGTCT CTGTCTGTCT CTATGTCCCT CTGTCTCTCT
  GTCTCTGTCT TTCTCTGTCT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss137579229	ENSMUSSNP1032125	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52623085					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:32985407 () rs orientation: forward

Symbol	Name	Function Class
4933406C10Rik	RIKEN cDNA 4933406C10 gene	within coordinates
Gm51998	predicted gene, 51998	1464 bp upstream
Rr464834	regulatory region 464834	1249 bp proximal