rs52624846 SNP Detail

Summary

• ID
  rs52624846
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:101049541 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGTA CCTGGCCCAG CCGCTGCAGC
  M
  GGAAGCCCCG CTCCGCTCCT CCCGC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss137998146	ENSMUSSNP5184591	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss324139382	CHEV_12_102321492	CHEVERUD	SCREENING_POP	f	SNP			A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs52624846					SNP	C	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:101049541 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4995	CpG island 4995	within coordinates
D130020L05Rik	RIKEN cDNA D130020L05 gene	within coordinates
Ppp4r3a	protein phosphatase 4 regulatory subunit 3A	within coordinates
Rr264939	regulatory region 264939	within coordinates
Rr387703	regulatory region 387703	within coordinates
Tssr114723	transcription start site region 114723	309 bp downstream
Tssr114724	transcription start site region 114724	430 bp upstream
Tssr114725	transcription start site region 114725	474 bp upstream
Tssr114726	transcription start site region 114726	524 bp upstream
Tssr117352	transcription start site region 117352	167 bp downstream
Tssr117353	transcription start site region 117353	293 bp downstream
Tssr117354	transcription start site region 117354	371 bp downstream